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CEGS HiSeq Services
For help contact mnajarian@cs.unc.edu

Single query tools:

  • K-mer search - Searches one or more datasets for a k-mer and displays a single consensus
  • Allele search - Searches one or more datasets for a k-mer and groups the results based on multiple consensuses

Reference-based tools:

  • Reference pileup - Searches a single dataset for evidence of a gene or genomic region. Options for reference correction provided.
  • GRC Mus build 38 v68 pileup - Searches a single dataset for evidence of a gene or genomic region. This version needs performance improvements, but it times out more gracefully. Currently, it does not support correction.

Interactive tools:

  • Targetted Assembler - Interactive assembler using a k-mer seed and a threshold
  • Mass Query - A tool for performing many k-mer counts in one sample
  • Batch Query - A tool for performing many k-mer counts in multiple samples

The tools available through this website are powered by the MSBWT Utility Suite package and API.


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© 2010 Leonard McMillan, Alex Jackson and UNC Computational Genetics