Enter a batch of k-mer queries. Options for entry:
Manually: each query is separated by a new line ("\n") character
File upload: a plain text file where each query is separated by a new line ("\n") character
Input Header Line: check this if the first line of input is a list of column headers
Delimiter: currently CSV and tab-delimited input is accepted
Column with Labels: the column with the query labels (required)
Column with Queries: the column with the k-mer queries (required)
Reverse-Complement counts: select the type of counts to retrieve
Click the "Execute Batch Query" button to begin performing queries in batches. Results will be displayed as the server finishes groups of queries.
Optionally download the result to your computer with the "Download Output" link below the output textbox.
Citations:
Crowley JJ et al. (2015). Analyses of allele-specific gene expression in highly divergent mouse crosses identifies pervasive allelic imbalance. Nature genetics.
Keene TM et al. (2011) Mouse genomic variation and its effect on phenotypes and gene regulation. Nature 477: 289-294. http://dx.doi.org/10.1038/nature10413; http://www.sanger.ac.uk/resources/mouse/genomes/
Swallow JG, Carter PA, Garland T. (1998) Artificial selection for increased wheel-running behavior in house mice. Behav Genet 28(3): 227-237. http://www.ncbi.nlm.nih.gov/pubmed/9670598
Phifer-Rixey M, Bomhoff M, Nachman MW. (2014) Genome-wide patterns of differentiation among house mouse subspecies. Genetics 198(1): 283-297. http://dx.doi.org/10.1534/genetics.114.166827
The Wellcome Trust Sanger Center. Caroli Genome Project. http://www.ncbi.nlm.nih.gov/bioproject/PRJEB2188