Compgen Tool Suite

msBWT Counts:

This page provides cached msBWT count queries of k-mers from the Genome Reference Consortium mouse reference assembly (GRCm38_68.fa). The primary set of k-mers are non-overlapping 45-mers, with genomic postions orginating at positions where (position mod 45) == 1. For some datasets additonal overlapping 45-mer are available with offets of 15 and 30 bases from the default set (position mod 45) == 15 or 30.

A window is viewed according to the samples and Chomomsome and genomic range specified.

Dataset	N	k	offset	Description
CC Genomes 45/45	86	45	45	Select one CC sample and 1 or 2 sets of CC lines based on the founder at the specified region
CC Genomes 45/15	86	45	15/30/45	Select one CC sample and 1 or 2 sets of CC lines based on the founder at the specified region
CC Genome Compare	86	45	45	Allows selection of multiple CC samples in one of 3 groups
C57B/6J Pedigree	24	45	45	Pedigrees of two lines, A and B, with common progenitors (O_F, O_M).
Sister strains	33	45	45	Sequenced samples from various sister mouse strains. You select one sample and/or one sister set.
Collaborative Cross	??	59	59	Allows selection of multiple CC samples in one of 3 groups
Collaborative Cross	??	59	59	Select one CC sample and 1 or 2 sets of CC lines based on the founder at the specified region